STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g00050DBnaC01g00050D protein. (282 aa)    
Predicted Functional Partners:
BnaC03g42200D
BnaC03g42200D protein.
  
     0.506
BnaA02g13750D
BnaA02g13750D protein.
  
     0.505
BnaC02g45680D
BnaC02g45680D protein.
  
     0.500
BnaC01g22450D
BnaC01g22450D protein.
  
     0.491
BnaC02g48250D
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.490
BnaA05g19620D
BnaA05g19620D protein.
  
     0.483
BnaC04g24430D
BnaC04g24430D protein; Belongs to the glycosyl hydrolase 17 family.
  
     0.481
BnaCnng21550D
BnaCnng21550D protein.
  
     0.478
BnaUnng03010D
BnaUnng03010D protein.
  
     0.477
BnaC05g30690D
BnaC05g30690D protein.
  
     0.476
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.