STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g20200DBnaA04g20200D protein. (777 aa)    
Predicted Functional Partners:
BnaC03g74380D
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
    
 0.537
BnaCnng20770D
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.
    
 0.497
BnaCnng28360D
BnaCnng28360D protein.
    
 0.497
BnaCnng74930D
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.
    
 0.497
BnaA04g26150D
BnaA04g26150D protein.
   
 0.482
BnaC04g56940D
BnaC04g56940D protein.
   
 0.482
BnaC04g53100D
BnaC04g53100D protein.
   
 0.482
BnaUnng01290D
BnaA09g17430D protein.
    
 0.480
BnaA09g35760D
Alpha-galactosidase.
      
 0.467
BnaA05g18270D
Alpha-galactosidase.
      
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.