STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g42400DBnaC06g42400D protein. (79 aa)    
Predicted Functional Partners:
BnaC02g19900D
BnaC02g19900D protein.
    
 
 0.617
BnaA09g55330D
BnaA09g55330D protein.
   
 
 0.495
BnaA09g13310D
BnaA09g13310D protein.
    
 
 0.493
BnaC09g13580D
BnaC09g13580D protein.
    
 
 0.493
BnaC03g28030D
BnaC03g28030D protein.
    
 
 0.445
BnaCnng59830D
BnaCnng59830D protein.
    
 
 0.445
BnaC03g72890D
BnaC03g72890D protein.
   
 
 0.434
BnaCnng46740D
BnaCnng46740D protein.
   
 
 0.434
BnaAnng39120D
BnaAnng39120D protein.
   
 
 0.434
BnaA09g45470D
BnaA09g45470D protein.
      
 0.418
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.