STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g05220DPurple acid phosphatase. (547 aa)    
Predicted Functional Partners:
BnaC08g44330D
Beta-hexosaminidase.
  
  
 0.522
BnaA07g25350D
Beta-hexosaminidase.
  
  
 0.517
BnaC06g27130D
BnaC06g27130D protein.
  
  
 0.517
BnaCnng30620D
BnaCnng30620D protein.
  
  
 0.515
BnaA09g08200D
BnaA09g08200D protein.
     
 0.485
BnaA09g45430D
BnaA09g45430D protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
      
 0.469
BnaA08g31390D
BnaA08g31390D protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
      
 0.469
BnaA09g15170D
BnaA09g15170D protein.
     
 0.467
BnaC06g15480D
BnaC06g15480D protein.
   
  
 0.466
BnaC04g51030D
BnaC04g51030D protein.
   
  
 0.465
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.