STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g10090DWAT1-related protein. (334 aa)    
Predicted Functional Partners:
BnaA03g47280D
BnaA03g47280D protein.
      
 0.465
BnaA03g57080D
BnaA03g57080D protein.
  
     0.443
BnaCnng71750D
BnaCnng71750D protein.
  
     0.438
BnaC09g39590D
BnaC09g39590D protein.
  
     0.433
BnaC04g13380D
BnaC04g13380D protein.
  
     0.430
BnaA07g01720D
BnaA07g01720D protein; Belongs to the GRAS family.
  
     0.422
BnaC07g03310D
BnaC07g03310D protein; Belongs to the GRAS family.
  
     0.420
BnaC01g15220D
BnaC01g15220D protein.
  
     0.418
BnaCnng16130D
BnaCnng16130D protein.
  
     0.418
BnaC09g20640D
BnaC09g20640D protein.
  
     0.416
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.