Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g06330DBnaC06g06330D protein. (400 aa)    
Predicted Functional Partners:
BnaA09g06200D
BnaA09g06200D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
  0.737
BnaA06g24650D
BnaA06g24650D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
  0.669
BnaCnng13280D
BnaCnng13280D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
  0.669
BnaAnng26370D
BnaAnng26370D protein.
    
  0.669
BnaA02g24120D
BnaA02g24120D protein.
    
   0.658
BnaCnng37840D
BnaCnng37840D protein.
    
   0.658
BnaA06g40210D
BnaA06g40210D protein.
    
   0.658
BnaA09g03210D
BnaA09g03210D protein.
    
  0.650
BnaA09g03220D
BnaA09g03220D protein.
    
  0.650
BnaCnng30890D
BnaCnng30890D protein.
    
  0.650
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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