Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g06330DBnaC04g06330D protein. (424 aa)    
Predicted Functional Partners:
BnaA03g51000D
BnaA03g51000D protein.
     
 0.580
BnaA07g24800D
BnaA07g24800D protein.
      
 0.572
BnaC08g44830D
BnaC08g44830D protein.
      
 0.572
BnaA09g10060D
BnaA09g10060D protein.
      
 0.572
BnaA06g40280D
BnaA06g40280D protein.
      
 0.572
BnaA01g17510D
BnaA01g17510D protein.
      
 0.459
BnaC01g21860D
BnaC01g21860D protein.
      
 0.459
BnaA01g35360D
BnaA01g35360D protein.
      
 0.459
BnaA06g15970D
BnaA06g15970D protein.
  
  0.450
BnaA09g04890D
BnaA09g04890D protein.
  
  0.443
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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