STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g52800DBnaA03g52800D protein. (298 aa)    
Predicted Functional Partners:
BnaC03g73190D
BnaC03g73190D protein.
   
 0.933
BnaA04g05330D
BnaA04g05330D protein.
   
 0.928
BnaAnng11460D
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.889
BnaA09g51640D
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.889
BnaA04g26120D
BnaA04g26120D protein; Belongs to the universal ribosomal protein uS15 family.
   
 0.849
BnaC04g22000D
BnaA09g38730D protein; Belongs to the universal ribosomal protein uS15 family.
   
 0.849
BnaCnng31130D
BnaCnng31130D protein; Belongs to the universal ribosomal protein uS15 family.
   
 0.849
BnaA03g50690D
Ribosomal protein S14p/S29e family protein.
   
 0.847
BnaA06g20280D
BnaA06g20280D protein.
   
 0.847
BnaC03g66290D
BnaC03g66290D protein.
   
 0.847
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.