STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g52530DBnaA03g52530D protein. (473 aa)    
Predicted Functional Partners:
BnaC04g43570D
BnaC04g43570D protein; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.512
BnaC04g24110D
BnaC04g24110D protein.
  
   
 0.511
BnaA05g13040D
BnaA05g13040D protein.
      
 0.499
BnaA02g29880D
BnaA02g29880D protein.
      
 0.499
BnaA02g29890D
BnaA02g29890D protein.
      
 0.499
BnaC01g39620D
BnaC01g39620D protein.
  
     0.485
BnaCnng46170D
BnaCnng46170D protein; Belongs to the glycosyl hydrolase 28 family.
  
     0.483
BnaC07g49180D
BnaC07g49180D protein.
  
     0.482
BnaA05g20340D
BnaA05g20340D protein.
      
 0.472
BnaC03g41680D
BnaC03g41680D protein.
      
 0.472
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.