STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g12600DBnaA05g12600D protein. (224 aa)    
Predicted Functional Partners:
BnaC03g27330D
BnaC03g27330D protein.
   
 
 0.696
BnaA03g52900D
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
   
 
 0.696
BnaCnng69400D
BnaCnng69400D protein.
  
     0.509
BnaA06g32670D
BnaA06g32670D protein.
  
     0.508
BnaA02g28240D
BnaA02g28240D protein.
  
     0.508
BnaA10g13190D
Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity; Belongs to the adenylate kinase family. AK6 subfamily.
  
 0.505
BnaA09g28160D
BnaA09g28160D protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.502
BnaC05g37200D
BnaC05g37200D protein.
  
 0.498
BnaA08g07100D
BnaA08g07100D protein.
  
 0.480
BnaCnng48170D
BnaCnng48170D protein.
  
 0.480
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.