STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g27500DBnaA02g27500D protein. (274 aa)    
Predicted Functional Partners:
BnaC04g43490D
BnaC04g43490D protein.
  
 
  0.551
BnaC04g11620D
BnaC04g11620D protein.
  
 
  0.548
BnaC02g42130D
BnaC02g42130D protein.
  
 
  0.542
BnaAnng40700D
BnaAnng40700D protein.
  
 
  0.539
BnaC04g37560D
BnaC04g37560D protein.
  
 
  0.534
BnaC05g35200D
BnaC05g35200D protein.
     
 0.497
BnaC09g43570D
BnaC09g43570D protein.
    
 
 0.470
BnaA04g12260D
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
 
 0.460
BnaC08g46420D
BnaC08g46420D protein.
  
 
  0.442
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.413
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.