STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g22320DBnaC09g22320D protein. (170 aa)    
Predicted Functional Partners:
BnaC09g00300D
BnaC09g00300D protein.
  
     0.502
BnaC04g12910D
BnaC04g12910D protein.
  
     0.475
BnaA05g11200D
BnaA05g11200D protein.
  
     0.475
BnaC04g26450D
BnaC04g26450D protein.
      
 0.469
BnaA01g27390D
BnaA01g27390D protein.
  
     0.469
BnaA06g34180D
BnaA06g34180D protein.
      
 0.465
BnaC02g11530D
BnaC02g11530D protein.
  
     0.456
BnaA01g35630D
BnaA01g35630D protein.
  
     0.456
BnaC06g30430D
BnaC06g30430D protein.
  
     0.454
BnaA02g08140D
BnaA02g08140D protein.
  
     0.449
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.