STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g01890DBnaA08g01890D protein. (418 aa)    
Predicted Functional Partners:
BnaA06g37340D
BnaA06g37340D protein.
  
   
 0.646
BnaC04g47710D
BnaC04g47710D protein.
  
     0.528
BnaC04g29510D
BnaC04g29510D protein.
  
     0.527
BnaC04g26730D
BnaC04g26730D protein.
  
     0.523
BnaA09g27990D
BnaA09g27990D protein.
  
     0.523
BnaA07g03800D
BnaA07g03800D protein.
  
     0.523
BnaC06g14080D
BnaC06g14080D protein.
  
     0.522
BnaA05g15570D
BnaA05g15570D protein.
  
     0.522
BnaCnng08440D
BnaCnng08440D protein.
  
     0.522
BnaA04g17230D
BnaA04g17230D protein.
  
     0.521
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.