STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g09490DBnaA06g09490D protein. (158 aa)    
Predicted Functional Partners:
BnaA02g22130D
BnaA02g22130D protein.
   
 
 0.527
BnaC04g32060D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 
 0.486
CIPK24.1
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 
 0.486
BnaA09g20220D
BnaA09g20220D protein.
   
 
 0.481
BnaA03g52310D
BnaA03g52310D protein.
   
 0.478
BnaC03g66810D
BnaC03g66810D protein.
   
 0.478
BnaA08g11950D
BnaA08g11950D protein.
   
 0.478
BnaA09g04930D
BnaA09g04930D protein.
   
 0.417
BnaC02g41360D
BnaC02g41360D protein.
   
 0.417
CBL4.1
Calcineurin B-like 4.1.
   
 0.417
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.