STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g12770DBnaA07g12770D protein. (531 aa)    
Predicted Functional Partners:
BnaAnng07990D
BnaAnng07990D protein.
   
 
 0.790
BnaA03g47120D
BnaA03g47120D protein.
   
 
 0.687
BnaC08g42780D
BnaC08g42780D protein.
   
 
 0.687
BnaC06g10870D
BnaC06g10870D protein.
   
 
 0.687
BnaC03g16150D
BnaC03g16150D protein.
   
 
 0.687
BnaA03g13340D
BnaA03g13340D protein.
   
 
 0.687
BnaC09g12490D
BnaC09g12490D protein.
   
 
 0.669
BnaA09g44270D
BnaA09g44270D protein.
   
 
 0.669
BnaA02g21780D
BnaA02g21780D protein.
   
 
 0.669
BnaCnng42100D
BnaCnng42100D protein.
   
 
 0.669
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]