STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g21510DBnaC09g21510D protein. (244 aa)    
Predicted Functional Partners:
BnaC03g26680D
BnaC03g26680D protein.
    
 0.960
BnaCnng62080D
BnaCnng62080D protein.
    
 0.960
BnaC03g60090D
BnaC03g60090D protein.
   
 0.943
BnaA06g37370D
BnaA06g37370D protein.
   
 0.943
BnaA07g08190D
BnaA07g08190D protein.
   
 0.936
BnaC03g58920D
BnaC03g58920D protein.
   
 0.936
BnaA09g54190D
BnaA09g54190D protein.
   
 0.936
BnaC09g37640D
BnaC09g37640D protein; Belongs to the AAA ATPase family.
    
 0.935
BnaC02g09300D
BnaC02g09300D protein.
    
 0.935
BnaA02g04630D
BnaA02g04630D protein.
    
 0.935
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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