STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g05280DBnaA08g05280D protein. (510 aa)    
Predicted Functional Partners:
BnaC03g27330D
BnaC03g27330D protein.
    
 0.511
BnaA03g52900D
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
    
 0.511
BnaC03g63220D
BnaC03g63220D protein.
      
 0.503
BnaC09g40230D
Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
   
  
 0.498
BnaA10g17050D
BnaA10g17050D protein.
   
  
 0.498
BnaCnng18870D
BnaCnng18870D protein.
    
 
 0.483
BnaC06g40450D
BnaC06g40450D protein.
    
 
 0.480
BnaC05g49850D
BnaC05g49850D protein.
    
 
 0.480
BnaAnng22870D
BnaAnng22870D protein.
    
 
 0.480
BnaAnng40840D
BnaAnng40840D protein.
    
 
 0.480
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.