STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g10590DBnaA07g10590D protein. (199 aa)    
Predicted Functional Partners:
BnaC04g28900D
BnaC04g28900D protein.
  
     0.539
BnaA03g00140D
BnaA03g00140D protein.
  
    0.537
BnaCnng17150D
BnaCnng17150D protein.
  
     0.537
BnaC06g12070D
BnaC06g12070D protein.
  
     0.535
BnaCnng37120D
BnaCnng37120D protein.
  
     0.533
BnaC04g29000D
BnaC04g29000D protein.
  
     0.532
BnaA10g12970D
BnaA10g12970D protein.
  
     0.531
BnaC04g01360D
BnaC04g01360D protein.
  
    0.530
BnaC02g19380D
BnaC02g19380D protein.
  
     0.530
BnaC03g74740D
BnaC03g74740D protein.
  
     0.530
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.