Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g20040DBnaA08g20040D protein; Belongs to the protein kinase superfamily. (410 aa)    
Predicted Functional Partners:
BnaA10g11020D
BnaA10g11020D protein.
    
 
 0.483
BnaCnng14080D
BnaCnng14080D protein.
    
 
 0.483
BnaC09g53720D
BnaC09g53720D protein.
    
 
 0.483
BnaA03g56380D
BnaA03g56380D protein.
      
 0.448
BnaAnng34830D
BnaAnng34830D protein.
      
 0.448
BnaCnng65160D
BnaCnng65160D protein.
  
  0.420
BnaCnng48080D
BnaCnng48080D protein.
  
  0.419
BnaA09g04890D
BnaA09g04890D protein.
  
  0.417
BnaCnng45690D
BnaCnng45690D protein.
  
  0.410
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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