STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g42130DBnaA09g42130D protein. (186 aa)    
Predicted Functional Partners:
BnaA07g25750D
BnaA07g25750D protein.
    
 0.753
BnaC05g43300D
BnaC05g43300D protein.
   
 0.749
BnaA05g28820D
BnaA05g28820D protein.
   
 0.749
BnaC03g27570D
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
  
 0.743
BnaA07g04030D
BnaA07g04030D protein.
   
 0.732
BnaC09g47620D
BnaC09g47620D protein.
    
 0.661
BnaA09g03590D
BnaA09g03590D protein.
  
 
 0.654
BnaC02g39570D
BnaC02g39570D protein.
  
 
 0.654
BnaAnng11410D
BnaAnng11410D protein.
  
 
 0.654
BnaCnng77230D
BnaCnng77230D protein.
   
 0.645
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.