STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g12720DBnaA09g12720D protein. (236 aa)    
Predicted Functional Partners:
BnaC06g15880D
BnaC06g15880D protein.
  
     0.536
BnaA09g35750D
BnaA09g35750D protein.
  
     0.535
BnaC02g20670D
BnaC02g20670D protein.
  
     0.486
BnaC04g37450D
BnaC04g37450D protein.
  
     0.455
BnaA04g14720D
BnaA04g14720D protein.
  
     0.453
BnaC05g51440D
BnaC05g51440D protein.
  
     0.433
BnaA02g33190D
BnaA02g33190D protein.
  
     0.421
BnaC07g18090D
BnaC07g18090D protein.
  
     0.416
BnaC03g16190D
BnaC03g16190D protein.
  
     0.413
BnaA05g33350D
BnaA05g33350D protein.
  
     0.413
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.