Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BnaA09g41970DBnaA09g41970D protein. (735 aa)    
Predicted Functional Partners:
BnaA09g40860D
BnaA09g40860D protein.
      
 0.706
BnaA09g40350D
BnaA09g40350D protein.
      
 0.706
BnaC09g47000D
BnaC09g47000D protein; Belongs to the peptidase S10 family.
      
 0.706
BnaA09g41720D
Carboxypeptidase; Belongs to the peptidase S10 family.
      
 0.706
BnaA05g12750D
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
      
 0.706
BnaA09g41990D
BnaA09g41990D protein.
      
 0.706
BnaA09g42040D
BnaA09g42040D protein.
      
 0.706
BnaA09g41850D
BnaA09g41850D protein.
      
 0.706
BnaA09g42000D
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
      
 0.706
BnaA09g42030D
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
      
 0.706
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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