Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g66100DBnaC03g66100D protein. (664 aa)    
Predicted Functional Partners:
BnaAnng22590D
BnaAnng22590D protein.
      
 0.688
BnaC03g70040D
BnaC03g70040D protein.
      
 0.612
BnaA06g00570D
BnaA06g00570D protein.
      
 0.612
BnaC06g07030D
BnaC06g07030D protein.
      
 0.612
BnaCnng28470D
BnaCnng28470D protein.
      
 0.612
BnaA07g04890D
BnaA07g04890D protein.
  
   
 0.609
BnaC05g12080D
BnaC05g12080D protein.
     
 0.599
BnaA06g10530D
BnaA06g10530D protein.
     
 0.599
BnaA09g56560D
BnaA09g56560D protein.
     
 0.599
BnaC09g43110D
BnaC09g43110D protein.
     
 0.594
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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