Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g14300DBnaA07g14300D protein; Belongs to the protein kinase superfamily. (413 aa)    
Predicted Functional Partners:
BnaA04g16020D
BnaA04g16020D protein.
     
 0.614
BnaC08g26600D
BnaC08g26600D protein.
     
 0.614
BnaA09g06020D
BnaA09g06020D protein.
      
 0.588
BnaA04g25940D
BnaA04g25940D protein.
      
 0.586
BnaC06g14160D
BnaC06g14160D protein.
     
 0.563
BnaC06g14150D
BnaC06g14150D protein.
     
 0.563
BnaAnng15180D
BnaAnng15180D protein.
      
 0.510
BnaA04g15790D
BnaA04g15790D protein.
      
 0.509
BnaC03g47220D
BnaC03g47220D protein.
      
 0.509
BnaC03g16710D
BnaC03g16710D protein.
      
 0.474
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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