STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g24480DBnaA04g24480D protein. (264 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
 0.743
BnaA09g44280D
BnaA09g44280D protein.
    
 0.592
BnaA03g18330D
BnaA03g18330D protein.
    
  0.572
BnaC03g21850D
BnaC03g21850D protein.
    
  0.572
BnaCnng66930D
BnaCnng66930D protein.
  
 
  0.570
BnaCnng15050D
BnaCnng15050D protein.
  
 
  0.563
BnaA02g34700D
BnaA02g34700D protein.
  
 
  0.554
BnaC03g60510D
BnaC03g60510D protein.
  
 
  0.551
BnaC02g44200D
BnaC02g44200D protein; Belongs to the glycosyltransferase 2 family.
  
 
  0.547
BnaC02g09830D
BnaC02g09830D protein.
  
 
  0.546
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.