Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g05370DBnaA08g05370D protein. (618 aa)    
Predicted Functional Partners:
BnaC06g41570D
BnaC06g41570D protein.
      
 0.679
BnaA09g01920D
BnaA09g01920D protein.
      
 0.678
BnaAnng02290D
BnaAnng02290D protein.
      
 0.636
BnaA03g01820D
BnaA03g01820D protein.
      
 0.634
BnaC04g29600D
BnaC04g29600D protein.
      
 0.634
BnaC06g40290D
BnaC06g40290D protein.
      
 0.634
BnaC06g40260D
BnaC06g40260D protein.
      
 0.634
BnaC06g43690D
BnaC06g43690D protein.
    
 0.621
BnaA07g38880D
BnaA07g38880D protein.
    
 0.621
BnaA04g21740D
BnaA04g21740D protein.
      
 0.614
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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