Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g08960DBnaA09g08960D protein. (466 aa)    
Predicted Functional Partners:
BnaC03g60590D
BnaC03g60590D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
0.856
BnaA01g05490D
BnaA01g05490D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
0.856
BnaA06g40640D
BnaA06g40640D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
0.856
BnaC01g40660D
BnaC01g40660D protein; Belongs to the protein kinase superfamily.
    
0.856
BnaC02g28720D
BnaC02g28720D protein.
      
 0.748
BnaA07g04030D
BnaA07g04030D protein.
   
 0.746
BnaA04g14070D
BnaA04g14070D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
     
0.736
BnaA08g11770D
BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
     
0.736
BnaA03g52520D
BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
     
0.736
BnaA08g07100D
BnaA08g07100D protein.
  
 
 0.662
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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