Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g69300DBnaC03g69300D protein. (549 aa)    
Predicted Functional Partners:
BnaAnng02290D
BnaAnng02290D protein.
      
 0.747
BnaA09g01920D
BnaA09g01920D protein.
      
 0.747
BnaAnng13630D
BnaAnng13630D protein.
      
 0.747
BnaC06g41570D
BnaC06g41570D protein.
      
 0.747
BnaA03g01820D
BnaA03g01820D protein.
      
 0.713
BnaC06g40290D
BnaC06g40290D protein.
      
 0.710
BnaC06g40260D
BnaC06g40260D protein.
      
 0.709
BnaA04g21740D
BnaA04g21740D protein.
      
 0.708
BnaC04g29600D
BnaC04g29600D protein.
      
 0.708
BnaC06g43690D
BnaC06g43690D protein.
    
 0.700
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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