Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g42180DBnaC07g42180D protein. (366 aa)    
Predicted Functional Partners:
BnaC02g39890D
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.712
BnaA08g20740D
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.687
BnaA09g51790D
BnaA09g51790D protein; Belongs to the protein kinase superfamily.
     
 0.637
BnaC01g43600D
BnaC01g43600D protein.
  
   
 0.608
BnaA07g31910D
BnaA07g31910D protein; Belongs to the cytochrome P450 family.
      
 0.587
BnaC09g09290D
BnaC09g09290D protein.
     
 0.567
BnaA01g27920D
BnaA01g27920D protein.
     
 0.567
BnaA09g09060D
BnaA09g09060D protein.
     
 0.567
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaA02g13030D
BnaA02g13030D protein.
   
 
 0.553
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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