STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng15340DBnaCnng15340D protein. (92 aa)    
Predicted Functional Partners:
BnaA03g46540D
BnaA03g46540D protein.
      
 0.790
BnaA01g13710D
BnaA01g13710D protein.
      
 0.790
BnaA04g15080D
Mitochondrial fission 1 protein; Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes.
   
 
 0.548
BnaA04g05950D
BnaA04g05950D protein.
   
 0.533
BnaA03g59250D
BnaA03g59250D protein.
   
 0.533
BnaC09g53220D
BnaC09g53220D protein.
   
 0.533
BnaC05g04350D
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.525
BnaC05g04370D
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.525
BnaA10g28060D
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.525
BnaA10g28070D
BnaA10g28070D protein.
   
 0.525
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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