STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g05210DBnaC06g05210D protein. (166 aa)    
Predicted Functional Partners:
BnaC01g26650D
BnaC01g26650D protein.
  
     0.535
BnaC05g10420D
BnaC05g10420D protein.
  
     0.534
BnaA09g44180D
BnaA09g44180D protein.
  
     0.528
BnaA09g04640D
BnaA09g04640D protein.
  
     0.525
BnaUnng00220D
BnaA04g11470D protein.
  
     0.525
BnaC06g30490D
BnaC06g30490D protein.
  
     0.524
BnaC05g03660D
BnaC05g03660D protein.
  
     0.522
BnaUnng04360D
BnaUnng04360D protein.
  
     0.522
BnaA06g08980D
BnaA06g08980D protein.
  
     0.519
BnaA09g45770D
BnaA09g45770D protein.
  
     0.518
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.