STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g32980DBnaA02g32980D protein; Belongs to the cytochrome P450 family. (555 aa)    
Predicted Functional Partners:
BnaA09g34930D
BnaA09g34930D protein.
    
 0.827
BnaC05g00380D
BnaC05g00380D protein.
     
  0.800
BnaCnng63110D
BnaCnng63110D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
      
 0.770
BnaA05g30810D
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 
 0.745
BnaA03g01330D
BnaA03g01330D protein; Belongs to the cytochrome P450 family.
  
  
0.723
BnaA05g28270D
BnaA05g28270D protein; Belongs to the cytochrome P450 family.
  
  
 
0.720
BnaC09g50720D
BnaC09g50720D protein; Belongs to the cytochrome P450 family.
  
  
 
0.720
BnaC08g41990D
BnaC08g41990D protein; Belongs to the cytochrome P450 family.
  
  
0.719
BnaA08g31590D
BnaA08g31590D protein; Belongs to the cytochrome P450 family.
  
  
0.719
BnaC06g23880D
BnaC06g23880D protein.
     
 0.691
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.