BnaA08g05500D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BnaA08g05500D

BnaA08g05500D protein. (752 aa)

Predicted Functional Partners:

BnaC03g64780D

0.552

BnaA09g52970D

0.510

BnaCnng65430D

0.510

BnaC08g41590D

0.481

BnaA09g47410D

0.481

BnaA02g14640D

0.480

BnaCnng26270D

0.480

BnaA09g40040D

0.469

BnaA09g13260D

0.468

BnaC09g13530D

0.468

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g14640D	BnaA08g05500D	A0A078IJZ9	A0A078ID58	BnaA02g14640D protein.	BnaA08g05500D protein.	0.480
BnaA02g14640D	BnaA09g40040D	A0A078IJZ9	A0A078FH64	BnaA02g14640D protein.	BnaA09g40040D protein.	0.569
BnaA02g14640D	BnaA09g52970D	A0A078IJZ9	A0A078JEM5	BnaA02g14640D protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.709
BnaA02g14640D	BnaC03g64780D	A0A078IJZ9	A0A078GS55	BnaA02g14640D protein.	Pectate lyase.	0.698
BnaA02g14640D	BnaCnng65430D	A0A078IJZ9	A0A078JTP8	BnaA02g14640D protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.709
BnaA08g05500D	BnaA02g14640D	A0A078ID58	A0A078IJZ9	BnaA08g05500D protein.	BnaA02g14640D protein.	0.480
BnaA08g05500D	BnaA09g13260D	A0A078ID58	A0A078FL84	BnaA08g05500D protein.	BnaA09g13260D protein.	0.468
BnaA08g05500D	BnaA09g40040D	A0A078ID58	A0A078FH64	BnaA08g05500D protein.	BnaA09g40040D protein.	0.469
BnaA08g05500D	BnaA09g47410D	A0A078ID58	A0A078GMM0	BnaA08g05500D protein.	BnaA09g47410D protein.	0.481
BnaA08g05500D	BnaA09g52970D	A0A078ID58	A0A078JEM5	BnaA08g05500D protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.510
BnaA08g05500D	BnaC03g64780D	A0A078ID58	A0A078GS55	BnaA08g05500D protein.	Pectate lyase.	0.552
BnaA08g05500D	BnaC08g41590D	A0A078ID58	A0A078FSR7	BnaA08g05500D protein.	BnaC08g41590D protein.	0.481
BnaA08g05500D	BnaC09g13530D	A0A078ID58	A0A078FYZ0	BnaA08g05500D protein.	BnaC09g13530D protein.	0.468
BnaA08g05500D	BnaCnng26270D	A0A078ID58	A0A078IVV8	BnaA08g05500D protein.	BnaCnng26270D protein.	0.480
BnaA08g05500D	BnaCnng65430D	A0A078ID58	A0A078JTP8	BnaA08g05500D protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.510
BnaA09g13260D	BnaA08g05500D	A0A078FL84	A0A078ID58	BnaA09g13260D protein.	BnaA08g05500D protein.	0.468
BnaA09g13260D	BnaA09g40040D	A0A078FL84	A0A078FH64	BnaA09g13260D protein.	BnaA09g40040D protein.	0.536
BnaA09g13260D	BnaA09g52970D	A0A078FL84	A0A078JEM5	BnaA09g13260D protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.400
BnaA09g13260D	BnaC03g64780D	A0A078FL84	A0A078GS55	BnaA09g13260D protein.	Pectate lyase.	0.485
BnaA09g13260D	BnaCnng65430D	A0A078FL84	A0A078JTP8	BnaA09g13260D protein.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.400