Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g15500DBnaA04g15500D protein. (488 aa)    
Predicted Functional Partners:
BnaA03g51820D
BnaA03g51820D protein.
      
 0.750
BnaA08g13760D
BnaA08g13760D protein.
      
 0.709
BnaA06g24500D
BnaA06g24500D protein; Belongs to the leguminous lectin family.
      
 0.636
BnaC05g08680D
BnaC05g08680D protein.
      
 0.636
BnaC05g08670D
BnaC05g08670D protein.
      
 0.636
BnaAnng20840D
BnaAnng20840D protein; Belongs to the leguminous lectin family.
      
 0.636
BnaA05g19600D
BnaA05g19600D protein.
      
 0.627
BnaC05g30720D
BnaC05g30720D protein.
      
 0.627
BnaA07g08840D
BnaA07g08840D protein.
      
 0.613
BnaA09g27960D
BnaA09g27960D protein.
      
 0.613
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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