STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g23910DBnaC04g23910D protein. (138 aa)    
Predicted Functional Partners:
BnaC08g42960D
BnaC08g42960D protein.
    
 0.638
BnaA04g11880D
BnaA04g11880D protein; Belongs to the PI3/PI4-kinase family.
    
 0.594
BnaC03g74400D
DNA helicase; Belongs to the MCM family.
   
 0.581
BnaC04g36350D
BnaC04g36350D protein.
   
 0.554
BnaA04g14440D
BnaA04g14440D protein.
   
 0.554
BnaAnng15290D
BnaAnng15290D protein.
   
 0.554
BnaC09g37680D
BnaC09g37680D protein.
    
 0.476
BnaA09g08050D
BnaA09g08050D protein.
   
 0.470
BnaA07g07810D
BnaA07g07810D protein.
   
 0.454
BnaC06g27700D
DNA ligase.
   
 0.453
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.