STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g26810DBnaA04g26810D protein. (216 aa)    
Predicted Functional Partners:
BnaA01g34180D
BnaA01g34180D protein; Belongs to the ATPase B chain family.
   
 
 0.900
BnaC03g67270D
BnaA08g12170D protein; Belongs to the V-ATPase proteolipid subunit family.
   
 
 0.793
BnaC09g43620D
BnaC09g43620D protein.
   
 
 0.785
BnaC07g13560D
BnaC07g13560D protein.
   
 
 0.785
BnaA07g10310D
BnaA07g10310D protein.
   
 
 0.785
BnaA09g23090D
BnaA09g23090D protein.
   
 
 0.785
BnaA07g38430D
BnaA07g38430D protein.
   
 
 0.785
BnaCnng66500D
BnaCnng66500D protein.
   
 
 0.785
BnaA01g34190D
BnaA01g34190D protein; Belongs to the ATPase C chain family.
   
 
 0.770
BnaCnng12660D
BnaCnng12660D protein; Belongs to the ATPase C chain family.
   
 
 0.770
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.