Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng16830DBnaCnng16830D protein. (528 aa)    
Predicted Functional Partners:
BnaCnng14430D
BnaCnng14430D protein; Belongs to the protein kinase superfamily.
  
  0.463
BnaA06g15970D
BnaA06g15970D protein.
  
  0.451
BnaA09g04890D
BnaA09g04890D protein.
  
  0.441
BnaA05g17520D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
  
 
  0.440
BnaCnng65160D
BnaCnng65160D protein.
  
  0.439
BnaA08g02570D
BnaA08g02570D protein.
  
  0.438
BnaCnng48080D
BnaCnng48080D protein.
  
  0.436
BnaC03g40790D
BnaC03g40790D protein.
  
  0.435
BnaA01g26270D
BnaA01g26270D protein.
  
  0.432
BnaC04g51710D
BnaC04g51710D protein.
  
  0.431
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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