STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g16790DBnaA02g16790D protein. (462 aa)    
Predicted Functional Partners:
BnaC04g44540D
BnaC04g44540D protein.
  
 
  0.515
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.510
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.499
BnaA01g33720D
BnaA01g33720D protein.
  
 
  0.484
BnaA01g24490D
BnaA01g24490D protein.
  
     0.479
BnaC01g40310D
BnaC01g40310D protein.
  
 
  0.474
BnaC02g42130D
BnaC02g42130D protein.
  
     0.473
BnaA02g28080D
BnaA02g28080D protein.
  
     0.466
BnaC08g40810D
BnaC08g40810D protein.
  
     0.462
BnaA09g46730D
BnaA09g46730D protein.
  
     0.462
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.