STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g18080DCASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (199 aa)    
Predicted Functional Partners:
BnaC05g14960D
BnaC05g14960D protein.
  
     0.514
BnaA01g36260D
BnaA01g36260D protein.
  
     0.513
BnaA09g19830D
BnaA09g19830D protein.
  
     0.512
BnaC09g21830D
BnaC09g21830D protein.
  
     0.511
BnaC01g29890D
BnaC01g29890D protein.
  
     0.509
BnaCnng53800D
BnaCnng53800D protein.
  
     0.507
BnaC08g42370D
BnaC08g42370D protein.
  
     0.500
BnaC05g12040D
BnaC05g12040D protein.
  
     0.499
BnaA03g60690D
BnaA03g60690D protein.
  
     0.495
BnaC04g26710D
BnaC04g26710D protein.
  
     0.493
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.