STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g28080DBnaA02g28080D protein. (473 aa)    
Predicted Functional Partners:
BnaC02g39890D
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.553
BnaC06g29580D
BnaC06g29580D protein.
  
 
  0.536
BnaC03g59360D
BnaC03g59360D protein.
  
 
  0.536
BnaC04g12170D
BnaC04g12170D protein.
  
    0.517
BnaA04g18920D
BnaA04g18920D protein.
  
     0.513
BnaC01g43600D
BnaC01g43600D protein.
  
   
 0.513
BnaC04g11690D
BnaC04g11690D protein.
  
     0.510
BnaA05g10630D
BnaA05g10630D protein.
  
     0.509
BnaC04g43850D
BnaC04g43850D protein.
  
     0.508
BnaCnng64340D
BnaCnng64340D protein.
  
     0.506
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.