STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g01360DBnaA06g01360D protein. (127 aa)    
Predicted Functional Partners:
BnaA03g51860D
BnaA03g51860D protein.
      
 0.656
BnaAnng02240D
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
    
 
 0.652
BnaA02g28280D
BnaA02g28280D protein.
      
 0.648
BnaA05g34510D
BnaA05g34510D protein.
      
 0.648
BnaA09g55820D
BnaA09g55820D protein.
      
 0.648
BnaA09g26420D
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
      
 0.570
BnaA09g29020D
BnaA09g29020D protein.
  
 
   0.533
BnaA06g22870D
BnaA06g22870D protein.
  
     0.532
BnaA09g35730D
BnaA09g35730D protein.
  
     0.530
BnaAnng07900D
BnaAnng07900D protein.
  
     0.530
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.