BnaCnng19050D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BnaCnng19050D

BnaCnng19050D protein. (190 aa)

Predicted Functional Partners:

BnaA07g04030D

0.845

BnaC05g37050D

0.806

BnaC04g47780D

0.709

BnaA09g45410D

0.666

BnaA06g09640D

0.666

BnaC05g49530D

0.666

BnaA06g37350D

0.606

BnaC04g08490D

0.606

BnaC01g37210D

0.595

BnaA01g29590D

0.595

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA01g29590D	BnaA06g09640D	A0A078HMI1	A0A078I7B0	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaA06g09640D protein.	0.976
BnaA01g29590D	BnaA06g37350D	A0A078HMI1	A0A078GCI8	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaA06g37350D protein.	0.957
BnaA01g29590D	BnaA07g04030D	A0A078HMI1	A0A078HGX6	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaA07g04030D protein.	0.991
BnaA01g29590D	BnaA09g45410D	A0A078HMI1	A0A078H547	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaA09g45410D protein.	0.976
BnaA01g29590D	BnaC01g37210D	A0A078HMI1	A0A078H8R9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.900
BnaA01g29590D	BnaC04g08490D	A0A078HMI1	A0A078H3H7	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaC04g08490D protein.	0.957
BnaA01g29590D	BnaC04g47780D	A0A078HMI1	A0A078FNQ5	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.991
BnaA01g29590D	BnaC05g37050D	A0A078HMI1	A0A078GY49	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaC05g37050D protein.	0.983
BnaA01g29590D	BnaC05g49530D	A0A078HMI1	A0A078IL47	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaC05g49530D protein.	0.976
BnaA01g29590D	BnaCnng19050D	A0A078HMI1	A0A078IK89	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	BnaCnng19050D protein.	0.595
BnaA06g09640D	BnaA01g29590D	A0A078I7B0	A0A078HMI1	BnaA06g09640D protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.976
BnaA06g09640D	BnaA06g37350D	A0A078I7B0	A0A078GCI8	BnaA06g09640D protein.	BnaA06g37350D protein.	0.992
BnaA06g09640D	BnaA07g04030D	A0A078I7B0	A0A078HGX6	BnaA06g09640D protein.	BnaA07g04030D protein.	0.993
BnaA06g09640D	BnaA09g45410D	A0A078I7B0	A0A078H547	BnaA06g09640D protein.	BnaA09g45410D protein.	0.900
BnaA06g09640D	BnaC01g37210D	A0A078I7B0	A0A078H8R9	BnaA06g09640D protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.976
BnaA06g09640D	BnaC04g08490D	A0A078I7B0	A0A078H3H7	BnaA06g09640D protein.	BnaC04g08490D protein.	0.983
BnaA06g09640D	BnaC04g47780D	A0A078I7B0	A0A078FNQ5	BnaA06g09640D protein.	Nuclear pore protein.	0.989
BnaA06g09640D	BnaC05g37050D	A0A078I7B0	A0A078GY49	BnaA06g09640D protein.	BnaC05g37050D protein.	0.998
BnaA06g09640D	BnaC05g49530D	A0A078I7B0	A0A078IL47	BnaA06g09640D protein.	BnaC05g49530D protein.	0.543
BnaA06g09640D	BnaCnng19050D	A0A078I7B0	A0A078IK89	BnaA06g09640D protein.	BnaCnng19050D protein.	0.666