STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g46890DBnaC02g46890D protein. (277 aa)    
Predicted Functional Partners:
BnaA09g04670D
BnaA09g04670D protein.
    
  0.574
BnaA05g13650D
BnaA05g13650D protein.
    
 
 0.549
BnaC08g44000D
BnaC08g44000D protein.
    
 
 0.549
BnaC04g29240D
BnaC04g29240D protein.
    
 
 0.549
BnaA08g28100D
BnaA08g28100D protein.
    
 
 0.549
BnaC05g02890D
BnaC05g02890D protein.
    
 
 0.549
BnaC05g40000D
BnaC05g40000D protein.
    
 
 0.549
BnaC05g40020D
BnaC05g40020D protein.
    
 
 0.549
BnaC06g11030D
BnaC06g11030D protein.
    
 
 0.549
BnaA05g25960D
BnaA05g25960D protein.
    
 
 0.549
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.