Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g45850DBnaC02g45850D protein. (265 aa)    
Predicted Functional Partners:
BnaC09g12950D
BnaC09g12950D protein.
      
 0.706
BnaCnng19280D
BnaCnng19280D protein.
      
 0.570
BnaC06g02870D
BnaC06g02870D protein.
      
 0.567
BnaA05g13970D
BnaA05g13970D protein.
      
 0.566
BnaA05g13950D
BnaA05g13950D protein.
      
 0.566
BnaA08g14130D
BnaA08g14130D protein.
      
 0.566
BnaA10g09260D
BnaA10g09260D protein.
      
 0.566
BnaC01g19290D
BnaC01g19290D protein.
      
 0.566
BnaA03g11670D
BnaA03g11670D protein.
      
 0.566
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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