STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g37390DPyruvate kinase; Belongs to the pyruvate kinase family. (490 aa)    
Predicted Functional Partners:
BnaC04g08780D
BnaC04g08780D protein.
  
 0.955
BnaA05g12480D
BnaA05g12480D protein.
  
 0.955
BnaC04g54450D
BnaC04g54450D protein.
  
 0.955
BnaAnng21140D
BnaAnng21140D protein.
  
 0.955
BnaC04g55770D
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
    
 0.920
BnaC07g34250D
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.915
BnaC01g21080D
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.915
BnaA01g17800D
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.915
BnaA01g07270D
BnaA01g07270D protein.
     
  0.900
BnaA09g16190D
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.867
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.