Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g37150DBnaA01g37150D protein. (752 aa)    
Predicted Functional Partners:
BnaC03g54720D
BnaC03g54720D protein.
      
 0.694
BnaCnng43230D
BnaCnng43230D protein.
      
 0.648
BnaA08g30750D
BnaA08g30750D protein.
     
 0.636
BnaA02g20000D
BnaA02g20000D protein.
      
 0.632
BnaC02g06870D
BnaC02g06870D protein.
      
 0.584
BnaAnng07500D
BnaAnng07500D protein.
      
 0.584
BnaC08g04450D
BnaC08g04450D protein.
      
 0.549
BnaA03g55240D
BnaA03g55240D protein.
      
 0.549
BnaC03g67170D
BnaC03g67170D protein.
     
 0.526
BnaC03g67190D
BnaC03g67190D protein.
     
 0.526
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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