STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g09790DBnaC09g09790D protein. (946 aa)    
Predicted Functional Partners:
BnaA05g17520D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
  
 
  0.439
BnaC04g51710D
BnaC04g51710D protein.
  
 
  0.409
BnaCnng65160D
BnaCnng65160D protein.
  
 
  0.409
BnaA04g26710D
BnaA04g26710D protein.
  
 
  0.408
BnaA08g02570D
BnaA08g02570D protein.
  
 
  0.407
BnaC04g56870D
BnaC04g56870D protein.
  
 
  0.406
BnaA01g26270D
BnaA01g26270D protein.
  
 
  0.405
BnaC03g40790D
BnaC03g40790D protein.
  
 
  0.405
BnaCnng45690D
BnaCnng45690D protein.
  
 
  0.404
BnaCnng48080D
BnaCnng48080D protein.
  
 
  0.402
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.