Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g09790DBnaC09g09790D protein. (946 aa)    
Predicted Functional Partners:
BnaA02g05510D
BnaA02g05510D protein.
      
 0.706
BnaA03g47520D
BnaA03g47520D protein.
      
 0.705
BnaC07g11960D
BnaC07g11960D protein.
      
 0.705
BnaA02g11010D
BnaA02g11010D protein.
      
 0.705
BnaA09g45490D
BnaA09g45490D protein.
      
 0.705
BnaA08g19560D
BnaA08g19560D protein.
      
 0.705
BnaC05g10900D
BnaC05g10900D protein.
      
 0.705
BnaA06g09530D
BnaA06g09530D protein.
      
 0.705
BnaA09g57040D
BnaA09g57040D protein.
      
 0.705
BnaCnng29610D
BnaCnng29610D protein.
      
 0.705
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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