STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g27830DBnaC06g27830D protein. (1220 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
 0.743
BnaA03g18330D
BnaA03g18330D protein.
    
  0.572
BnaC03g21850D
BnaC03g21850D protein.
    
  0.572
BnaA02g14580D
BnaA02g14580D protein.
     
 0.515
BnaCnng61400D
BnaCnng61400D protein.
     
 0.487
BnaCnng64010D
BnaCnng64010D protein; Belongs to the ABC transporter superfamily.
      
 0.469
BnaC01g32310D
BnaC01g32310D protein.
    
 0.458
BnaA01g25390D
BnaA01g25390D protein.
    
 0.458
BnaA04g05330D
BnaA04g05330D protein.
    
 0.452
BnaA06g02340D
BnaA06g02340D protein.
    
 0.452
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.