Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g56220DBnaA09g56220D protein; Belongs to the protein kinase superfamily. (390 aa)    
Predicted Functional Partners:
BnaA09g52160D
BnaA09g52160D protein.
    
 
 0.528
BnaA04g17390D
Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family.
      
 0.503
BnaA03g18410D
BnaA03g18410D protein.
      
 0.452
BnaC03g21920D
BnaC03g21920D protein.
      
 0.452
BnaC08g04450D
BnaC08g04450D protein.
      
 0.452
BnaA01g23420D
BnaA01g23420D protein.
      
 0.452
BnaC01g30510D
BnaC01g30510D protein.
      
 0.452
BnaA03g55240D
BnaA03g55240D protein.
      
 0.452
BnaCnng34160D
Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family.
      
 0.441
BnaA09g05240D
Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family.
      
 0.441
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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