STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g56320DBnaA09g56320D protein. (275 aa)    
Predicted Functional Partners:
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.687
BnaA09g30730D
BnaA09g30730D protein.
   
 0.629
BnaC05g17460D
BnaC05g17460D protein.
   
 0.629
BnaA07g10580D
BnaA07g10580D protein.
   
 0.629
BnaAnng11460D
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.526
BnaA09g51640D
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.526
BnaC07g31620D
BnaC07g31620D protein.
   
 0.505
BnaAnng03890D
BnaAnng03890D protein.
   
 0.505
BnaC03g65910D
BnaC03g65910D protein.
    
 0.433
BnaC09g13130D
BnaC09g13130D protein.
    
 0.433
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.